Graphify workflow

Graphify makes repository and evidence relationships explorable. The 2D and 3D views are generated from the same graph.

Refresh

npm run graph:update
npm run check:graph

The update command:

1. removes old generated graph assets and graphify-out/;
2. runs graphify update . --force;
3. verifies raw graph.json and graph.html;
4. publishes a local 2D view and a 3D view into docs/assets/generated/;
5. enriches relationships for source definitions/citations, navigation, filesystem containment and file references;
6. rejects accidental self-ingestion and checks navigation/source coverage.

The graph is navigation, not evidence. Follow a node to the canonical Markdown page and then to the source register and primary authority.